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Identification of HTRA1, DPT and MXRA5 as potential biomarkers associated with osteoarthritis progression and immune infiltration
BMC Musculoskeletal Disorders volume 25, Article number: 647 (2024)
Abstract
Background
Our study aimed to identify potential specific biomarkers for osteoarthritis (OA) and assess their relationship with immune infiltration.
Methods
We utilized data from GSE117999, GSE51588, and GSE57218 as training sets, while GSE114007 served as a validation set, all obtained from the GEO database. First, weighted gene co-expression network analysis (WGCNA) and functional enrichment analysis were performed to identify hub modules and potential functions of genes. We subsequently screened for potential OA biomarkers within the differentially expressed genes (DEGs) of the hub module using machine learning methods. The diagnostic accuracy of the candidate genes was validated. Additionally, single gene analysis and ssGSEA was performed. Then, we explored the relationship between biomarkers and immune cells. Lastly, we employed RT-PCR to validate our results.
Results
WGCNA results suggested that the blue module was the most associated with OA and was functionally associated with extracellular matrix (ECM)-related terms. Our analysis identified ALB, HTRA1, DPT, MXRA5, CILP, MPO, and PLAT as potential biomarkers. Notably, HTRA1, DPT, and MXRA5 consistently exhibited increased expression in OA across both training and validation cohorts, demonstrating robust diagnostic potential. The ssGSEA results revealed that abnormal infiltration of DCs, NK cells, Tfh, Th2, and Treg cells might contribute to OA progression. HTRA1, DPT, and MXRA5 showed significant correlation with immune cell infiltration. The RT-PCR results also confirmed these findings.
Conclusions
HTRA1, DPT, and MXRA5 are promising biomarkers for OA. Their overexpression strongly correlates with OA progression and immune cell infiltration.
Introduction
Osteoarthritis (OA) is a common chronic degenerative joint disease affecting millions of people worldwide [1]. It is characterized by the cartilage deterioration, subchondral osteosclerosis, osteophyte formation and synovial inflammation [2, 3]. The clinical symptoms include joint pain and dysfunction, eventually leading to disability [4]. Recent study indicates that early diagnosis and timely intervention can not only relieve temporary symptoms but also delay OA progression [5]. However, reliable biological markers for OA remain limited, and the pathogenesis of OA is not completely understood. Thus, identifying biomarkers for OA and exploring the molecular mechanisms of its development is essential.
Recently, immune cell infiltration has emerged as a significant contributor to OA pathophysiology [6]. These immune cells include mast cells, macrophages, lymphocytes, and neutrophils [7, 8]. These cells produce pro-inflammatory mediators, secrete degrading enzymes, and disrupt the metabolism of various joint cells [9, 10]. Targeting immune cells may provide a promising disease-modifying strategy for OA; however, the underlying mechanisms of immune cell infiltration require further elucidation. Thus, it is important to explore the genes that regulate this infiltration.
In the present study, we initially conducted a weighted gene co-expression network analysis (WGCNA) to identify the module most relevant to OA. Subsequently, we performed functional enrichment analysis along with protein-protein interaction (PPI) assessments to explore the potential roles and interactions of genes within this key module. Leveraging a machine learning algorithm, we identified seven candidate molecules. After validation of their diagnostic accuracy, we obtained the final biomarkers. Lastly, we performed single-gene analysis and single-sample gene set enrichment analyses (ssGSEA) to reveal the biological functions and immunological correlates of these biomarkers. Taken together, the aim of our study was to identify potential specific biomarkers for OA progression and assess their association with immune infiltration.
Materials and methods
Data collection and processing
The gene expression profiles of GSE117999, GSE51588, GSE57218, and GSE114007 were downloaded from the Gene Expression Omnibus (GEO) database. GSE117999 contains 24 samples, including 12 cartilage tissue samples from normal joints and 12 cartilage tissue samples from OA joints. GSE51588 contains 50 samples, including 10 subchondral bone tissue samples from normal joints and 40 subchondral bone tissue samples from OA joints. GSE57218 contains 73 samples, including 7 cartilage tissue samples from normal joints and 66 cartilage tissue samples from OA joints. GSE114007 contains 38 samples, including 18 cartilage tissue samples from normal joints and 20 cartilage tissue samples from OA joints. Batch effects were removed using the “sva” R package, followed by normalization with the “limma” R package [11]. The GSE117999, GSE51588, and GSE57218 cohorts functioned as the training set, while GSE114007 served as the validation set.
WGCNA analysis and module selection
A gene co-expression network was established using the WGCNA R package with normalized expression data for 16,106 genes in the training set [12]. A hierarchical clustering analysis preceded module detection. The scale-free topology criterion then determined the optimal soft-thresholding power (β). Then, average connectivity and independent traits of each module were assessed using selected β values. A network was subsequently constructed. Gene significance (GS) quantified the relations between individual genes and OA, while module membership (MM) gauged the importance of the gene profile within modules. The module demonstrating the highest GS and MM was identified as the hub module Genes with |log2FC| > 1 and false discovery rate (FDR) < 0.05, were identified as differentially expressed genes (DEGs).
Functional enrichment analysis
Genes in the hub module were extracted for Gene Ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis using the “clusterProfiler” R package [13]. Terms and pathways with achieving FDR < 0.05 were considered significantly enriched.
Construction of the PPI network
PPI networks of genes in the hub module were predicted using the STRING database (http://string-db.org; version 11.5) [14]. PPI networks were constructed with an interaction score of > 0.4.
Screening and verifying biomarkers
Three machine learning methods-least absolute shrinkage and selection operator (LASSO) logistic regression, support vector machine (SVM), and random forest (RF)-were used to screen biomarkers for OA. The LASSO algorithm was conducted via the “glmnet” R package. The SVM module was implemented using “e1071” and “kernlab” R package. RF analysis was performed using “randomForest” R package. The intersection of results from LASSO, SVM, and RF constituted the candidate diagnostic gene for further analysis. Statistical significance was set at P < 0.05.
Boxplots were used to compare the differential expression of biomarkers between healthy and OA tissues in both the training and validation sets. Receiver operating characteristic (ROC) curve analysis was used to assess the diagnostic accuracy.
Single gene analysis
Single gene analysis included differential expression analysis, GO, KEGG enrichment analysis, and gene set enrichment analyses (GSEA). Based on the median expression levels of each key genes (HTRA1, DPT, and MXRA5), we categorized 98 osteoarthritis (OA) patients into high and low expression groups. The identified DEGs were used for the GO, KEGG, and GSEA enrichment analyses. The GO and KEGG analysis were carried out as before. GSEA was conducted using GESA 3.0 software [15].
Evaluating immune cell infiltration
The ssGSEA methods was applied to with “GSVA” R package to to evaluate immune cell infiltration levels. The cell-specific markers of the 28 types of immune cells were obtained from a previous study [16]. We compared immune cell counts across groups and assessed correlations among the 28 infiltrating immune cell types.
Correlation analysis between biomarkers and immune cells
Spearman correlation analysis was conducted to explore potential relationships between biomarker expression and infiltrating immune cells with “corrplot” R package. The result was visualized with “ggplot2” R package.
Real-time polymerase chain reaction (RT-PCR) validation
To validate our bioinformatics findings, we harvested cartilage and subchondral bone from five OA patients undergoing total joint arthroplasty for RT-PCR confirmation. This study was approved by the Ethical Committees of our hospital (2023A02), and informed consent was obtained from all patients. We categorized tissues into intact cartilage with underlying subchondral bone (control samples) and degenerative cartilage with underlying subchondral bone (OA samples). Total RNA was extracted from tissues using TRIzol reagent (Invitrogen, USA). Total RNA was then reverse-transcribed to cDNA and RT-PCR was performed using a PCR Kit (Promega, China) following the manufacturer’s instructions. The target genes were HTRA1, DPT, and MXRA5, and GAPDH was used as an internal reference. The primers used are listed in Table 1. The relative mRNA expression was calculated using the 2−ΔΔCt method.
Results
Identification of the key module and enrichment analysis
To identify the key module most associated with OA, WGCNA was performed using the expression levels of 16,106 genes. Clustering analysis facilitated module detection, yielding seven distinct modules represented by unique colors (Fig. 1A). The soft thresholding power β was determined to be 6 (Fig. 1B). As shown in Fig. 1C, the blue module showed the strongest association with OA (R = 0.37, P = 6e-06). Thus, the blue module, containing 327 genes, was considered the key module.
Functional enrichment analysis was performed to explore the potential functions of the genes in the key module. GO results showed that the main biological process (BP) involved extracellular structure organization and extracellular matrix (ECM) organization, the cellular component (CC) primarily consisted of the ECM and basement membrane, and the molecular function (MF) mainly encompassed ECM structural constituents, glycosaminoglycan binding, and growth factor binding (Fig. 1D). KEGG pathway enrichment analysis showed that revealed significant involvement of these genes in focal adhesion, ECM-receptor interactions, the Hippo signaling pathway, and the TGF-β signaling pathway (Fig. 1E). These results imply that ECM alterations may play a pivotal role in OA. Subsequently, a PPI network was constructed to investigate interactions among these genes (Fig. 1F).
Screening and verifying biomarkers
A total of 52 DEGs from the key module were extracted. The heatmap showed the differences in gene expression between OA patients and healthy controls (Fig. 2A). Biomarker selection was performed using the training set. The LASSO regression model revealed 22 DEGs relevant to OA (Fig. 2BC). Using the SVM algorithm, we identified 16 DEGs as potential biomarkers (Fig. 2D). Additionally, the RF algorithm was applied (Fig. 2E), and the top ten genes are shown in Fig. 2F. Detailed results from the three machine learning methods are available in Supplemental Table 1. Ultimately, by considering the overlaps among the three methods, seven biomarkers for OA were identified (Fig. 2G). These included ALB, HTRA1, DPT, MXRA5, CILP, MPO, and PLAT.
We evaluated the diagnostic accuracy of these seven biomarkers in both training and validation datasets. Analysis of expression levels among biomarkers in the training sets indicated that ALB and MPO exhibited reduced expression in OA patients, while HTRA1, DPT, MXRA5, CILP, and PLAT presented increased expression levels (P < 0.001) (Fig. 3A). The AUCs of ALB, HTRA1, DPT, MXRA5, CILP, MPO, and PLAT for OA were 0.820, 0.813, 0.773, 0.772, 0.740, 0.785, and 0.778, respectively (Fig. 3B). Notably, in the validation set, only three genes (HTRA1, DPT, and MXRA5) were differentially expressed. Consistent with training set findings, these three genes showed significantly higher expression levels in the OA group (P < 0.001) (Fig. 3C). The AUCs of HTRA1, DPT, and MXRA5 for OA diagnosis in the validation set were 0.964, 0.844, and 0.947, respectively (Fig. 3D). Taken together, these results indicate that HTRA1, DPT, and MXRA5 are valuable biomarkers for OA.
Single gene analysis of hub biomarkers
To better understand the role of the three hub biomarkers in OA, single-gene analysis was performed. Based on the median expression level of HTRA1, OA patients were divided into high- and low-expression groups. The high-expression group exhibited differential expression of 209 genes compared to the low-expression group, with 144 genes upregulated and 65 downregulated (Fig. 4A). GO functional enrichment analysis revealed that these DEGs primarily participated in ossification, development of bone and cartilage, and extracellular matrix organization (Fig. 4B). KEGG pathway analysis showed that these DEGs were significantly enriched in ECM-receptor interaction, cytokine-cytokine receptor interaction, focal adhesion, and PI3K-Akt signaling pathway (Fig. 4C). GSEA analysis showed that the gene set of the low HTRA1 expression OA group was mainly involved in signaling pathways such as the adipocytokine signaling pathway, cytokine-cytokine receptor interaction, and neuroactive ligand receptor interaction (Fig. 4D), whereas the gene set of the high HTRA1 expression group substantially participated in the cell cycle, ECM receptor interaction, focal adhesion, and ribosome (Fig. 4E).
Similarly, based on the median DPT expression level, patients with OA were divided into high- and low-expression groups. The high-expression group showed differential expression of 93 genes relative to the low-expression group, with 76 genes upregulated and 17 downregulated (Fig. 5A). GO functional enrichment analysis revealed that these DEGs were mainly involved in collagen metabolic processes, bone and cartilage development, and extracellular matrix organization (Fig. 5B). KEGG pathway analysis showed that these DEGs were significantly enriched in protein digestion and absorption, ECM-receptor interaction, focal adhesion, and phagosome (Fig. 5C). GSEA analysis showed that the gene set of the low DPT expression OA group was mainly involved in signaling pathways such as the adipocytokine signaling pathway, PPAR signaling pathway, and T cell receptor signaling pathway (Fig. 5D), whereas the gene set of the high DPT expression group substantially participated in ECM-receptor interaction, focal adhesion, oxidative phosphorylation, lysosomes, and ribosomes (Fig. 5E).
Following the same approach, we evaluated MXRA5 expression levels to categorize OA patients into high- and low-expression groups. The high-expression group manifested differential expression of 190 genes compared to the low-expression group, with 136 genes upregulated and 54 downregulated (Fig. 6A). GO functional enrichment analysis revealed that these DEGs were mainly involved in ossification, bone and cartilage development, and extracellular matrix organization (Fig. 6B). KEGG pathway analysis showed that these DEGs were significantly enriched for protein digestion and absorption, ECM-receptor interaction, focal adhesion, tyrosine metabolism, and the PI3K-Akt signaling pathway (Fig. 6C). GSEA analysis showed that the gene set of the low MXRA5 expression OA group was mainly involved in signaling pathways such as adipocytokine signaling pathway, fatty acid metabolism, and PPAR signaling pathway (Fig. 6D), whereas the gene set of the high MXRA5 expression group substantially participated in the cell cycle, ECM-receptor interaction, focal adhesion, and lysosomes (Fig. 6E).
Immune infiltration analysis
ssGSEA was performed to analyze differences in immune cell infiltration between OA and healthy tissues. Compared to healthy tissue, O exhibited a greater abundance of activated dendritic cells (aDCs), immature dendritic cells (iDCs), cytolytic activity, inflammation-promoting factors, parainflammation, natural killer (NK) cells, follicular helper T cells (Tfh), T helper 2 (Th2) cells, and type I interferon responses, while regulatory T cells (Tregs) were found in lower proportions (Fig. 7A). A heatmap illustrated the correlations among these immunocytes (Fig. 7B).
Correlation of HTRA1, DPT and MXRA5 with immune cell infiltration
We further examined the relationship between immune cell infiltration and the expression levels of HTRA1, DPT, and MXRA5. In patients with high HTRA1 expression, Th1 cells, B cells, NK cells, tumor-infiltrating lymphocytes (TIL), T cell co-stimulation, T cell co-inhibition, inflammation-promoting factors, checkpoint activity, cytolytic activity, and CD8 + T cells were present in lower proportions compared to patients with low HTRA1 expression (Fig. 8A). Correlation analysis indicated a negative association between HTRA1 expression and these immune cells, while a positive correlation existed with Tfh expression (Fig. 8B).
In patients with high DPT expression, proportions of B cells, cytolytic activity, CD8 + T cells, Th1 cells, and NK cells were lower, whereas higher proportions of parenchymal inflammation, macrophages, type I interferon responses, MHC class I molecules, neutrophils, HLA, dendritic cells (DCs), and plasmacytoid dendritic cells (pDCs) were observed (Fig. 8C). Correlation analysis revealed a positive association of DPT with elevated immune cell levels but a negative correlation with CD8 + T cells and Th1 cells (Fig. 8D).
For patients with low MXRA5 expression, proportions of Th1 cells, B cells, NK cells, CD8 + T cells, cytolytic activity, inflammation-promoting factors, T cell co-stimulation, and TIL were lower compared to those with high MXRA5 expression. Conversely, higher proportions of macrophages, inflammation, Tfh, type I interferon responses, and T helper cells were noted in the high-expression group (Fig. 8E). Correlation analysis indicated that MXRA5 positively correlated with elevated immune cell levels (excluding T helper cells) but negatively correlated with Th1 cells, B cells, NK cells, CD8 + T cells, cytolytic activity, and iDCs (Fig. 8F).
In summary, our findings suggest that HTRA1, DPT, and MXRA5 play significant roles in the regulation of various immune cells in OA.
RT-PCR validation of three biomarkers
The mRNA levels of the three crucial OA biomarkers were validated through RT-PCR. The expression levels of HTRA1, DPT, and MXRA5 were markedly higher in OA samples than in control samples (Fig. 9), aligning with the bioinformatics analysis results.
Discussion
OA is the most common degenerative joint disease and is associated with progressive degeneration of articular cartilage, ECM, and subchondral bone [17]. Nonetheless, critical genes and mechanisms underlying OA progression remain poorly understood, complicating early targeted intervention [10, 18]. Recent studies highlight the importance of immune cell infiltration in OA progression [6]. Therefore, identifying new biomarkers and exploring their relationship with immune cell infiltration patterns may provide promising early intervention strategies and improve the prognosis.
Our results revealed that HTRA1, DPT, and MXRA5 are upregulated in OA and could serve as promising biomarkers for OA. However, the specific roles of these biomarkers in OA pathophysiology require further elucidation. HTRA1 is a serine protease that modulates several biological processes including cell proliferation, migration, and fate determination [19]. HTRA1 can trigger ECM substrate degradation and contribute to various diseases, including cancer and neurodegenerative disorders [20,21,22]. In addition, HTRA1 promotes the expression of matrix metalloproteinases (MMPs) focal adhesion [23]. Emerging evidence indicates that HTRA1 facilitates inflammation and immune cell infiltration by activating the NF-kB signaling pathway [24, 25]. It may also exert an adverse impact on bone and cartilage formation via the TGF-β and BMP pathways [26, 27]. Moreover, after exposure to inflammatory cytokines, elevated HTRA1 levels correlate with cartilage degeneration, implying that heightened HTRA1 expression may precipitate OA progression [28].
DPT serves as a key component of the ECM, critical for cell adhesion and ECM assembly. It interacts with various proteins, enhancing biological activities and regulating the cell cycle and differentiation [29,30,31]. These effects may be achieved via the TGF-β, P13K/Akt, YAP, and Wnt signaling pathways [29, 32,33,34]. Furthermore, DPT is associated with ECM remodeling in contexts like adipose tissue, cancer, cardiac disorders, and wound healing [35,36,37,38]. Increased DPT expression correlates with elevated inflammation levels, promoting pro-inflammatory factors [interleukin (IL)-6, IL-8, tumor necrosis factors (TNF) and lipopolysaccharide (LPS)] and suppressing anti-inflammatory markers (IL-4) [35, 37, 39].
MXRA5, a secreted proteoglycan with VEGF receptor activity, is expressed in primates and mammals but not in mice or rats [40]. Like the other two biomarkers, MXRA5 is crucial for cell adhesion and ECM remodeling [41]. Its expression is elevated in chronic cardiac disorders, kidney diseases, and radiation-induced fibrosis [42,43,44,45]. Additionally, MXRA5 participates in tumorigenesis and could serve as a potential biomarker for early colorectal cancer, gastric cancer, glioma, and acute myeloid leukemia diagnosis [46,47,48,49]. Recent studies suggest that MXRA5 overexpression correlates with the expression of immune checkpoint molecules and the extent of immune cell infiltration [42, 47, 49].
Although abnormal alternations of these 28 types of immune cells in OA development have been widely discussed, results varied considerably across studies. Our study again investigated the significant changes in immune cell subpopulations and their functions within OA cartilage and subchondral bone. We observed increased infiltration of DCs, NKs, Tfh, Th2, alongside decreased Tregs, which may exacerbate OA. DCs, as primary mediators of immune response, play a crucial role in recruiting proinflammatory immune cells such as macrophages and neutrophils, while activating inflammatory T cells [50]. Macrophages serve as both initiators and effectors in OA, significantly contributing to immune recruitment, releasing pro-inflammatory cytokines, and mediating ECM degradation [51]. Neutrophils release enzymes that that cartilage ECM [52]. T cells secrete pro-inflammatory cytokines, and their accumulation in joints signifies OA progression [53, 54]. Therefore, analyzing the immune landscape of these cells in OA illuminates mechanisms driving OA progression, aiding in the identification of novel therapeutic target.
Next, we investigated correlations between HTRA1, DPT, MXRA5, and immune cells. Importantly, our findings indicated that high expression levels of these three genes consistently aligned with reduced Th1 cells, B cells, and NK cells, yet increased macrophages and Tfh cells. Prior research noted that HTRA1 promotes macrophage infiltration during anomalous ocular angiogenesis [24]. Another bioinformatic study revealed that a strong positive correlation between DPT and macrophage infiltration in breast cancer [55]. In addition, Sun et al. and Wen et al. suggested the significant association of MXRA5 with macrophage infiltration [42, 47]. Thus, we propose that HTRA1, DPT, and MXRA5 play critical roles in the OA immune microenvironment. Nonetheless, further investigations are essential to validate the complex interplay between these genes and immune cells.
Our study has some limitations. First, the sample size remains relatively limited. Second, the diagnostic accuracy of these three genes should be assessed in a large external cohort. Finally, the potential mechanisms revealed in this study require validation through in vitro and in vivo experiments.
Conclusion
Utilizing a combination of WCGNA and machine learning methods, our study identified elevated levels of HTRA1, DPT, and MXRA5 in OA, suggesting their potential as promising novel biomarkers. Additionally, our research indicates that immune cells might play a role in OA progression. HTRA1, DPT, and MXRA5 demonstrate a close correlation with immune cell infiltration. These findings not only unveil potential mechanisms underlying OA progression but also present novel critical biomarkers and promising immunotherapeutic targets for OA treatment.
Data availability
The data used for analysis in our study are available from GEO database.
References
Loeser RF, Goldring SR, Scanzello CR, Goldring MB. Osteoarthritis: a disease of the joint as an organ. Arthritis Rheum. 2012;64(6):1697–707. https://doi.org/10.1002/art.34453.
Man GS, Mologhianu G. Osteoarthritis pathogenesis - a complex process that involves the entire joint. J Med Life. 2014;7(1):37–41.
Li G, Yin J, Gao J, Cheng TS, Pavlos NJ, Zhang C, et al. Subchondral bone in osteoarthritis: insight into risk factors and microstructural changes. Arthritis Res Ther. 2013;15(6):223. https://doi.org/10.1186/ar4405.
Li H, Yang HH, Sun ZG, Tang HB, Min JK. Whole-transcriptome sequencing of knee joint cartilage from osteoarthritis patients. Bone Joint Res. 2019;8(7):290–303. https://doi.org/10.1302/2046-3758.87.Bjr-2018-0297.R1.
Li S, Cong W, Hakamivala A, Huang Y, Borrelli J Jr. Tang L. Hyaluronic Acid-Based Optical Probe for the Diagnosis of Human Osteoarthritic Cartilage. Nanotheranostics 2018;2(4):347 – 59. https://doi.org/10.7150/ntno.26119
Lopes EBP, Filiberti A, Husain SA, Humphrey MB. Immune contributions to Osteoarthritis. Curr Osteoporos Rep. 2017;15(6):593–600. https://doi.org/10.1007/s11914-017-0411-y.
Haseeb A, Haqqi TM. Immunopathogenesis of osteoarthritis. Clin Immunol. 2013;146(3):185–96. https://doi.org/10.1016/j.clim.2012.12.011.
Hu X, Ni S, Zhao K, Qian J, Duan Y. Bioinformatics-Led Discovery of Osteoarthritis biomarkers and inflammatory infiltrates. Front Immunol. 2022;13:871008. https://doi.org/10.3389/fimmu.2022.871008.
Li YS, Luo W, Zhu SA, Lei GH. T cells in Osteoarthritis: alterations and Beyond. Front Immunol. 2017;8:356. https://doi.org/10.3389/fimmu.2017.00356.
Tang C, Liu Q, Zhang Y, Liu G, Shen G. Identification of CIRBP and TRPV4 as Immune-related diagnostic biomarkers in Osteoarthritis. Int J Gen Med. 2021;14:10235–45. https://doi.org/10.2147/ijgm.S342286.
Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, et al. Limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;43(7):e47. https://doi.org/10.1093/nar/gkv007.
Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. 2008;9:559. https://doi.org/10.1186/1471-2105-9-559.
Yu G, Wang LG, Han Y, He QY. clusterProfiler: an R package for comparing biological themes among gene clusters. Omics. 2012;16(5):284–7. https://doi.org/10.1089/omi.2011.0118.
Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, et al. STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res. 2015;43(Database issue):D447–52. https://doi.org/10.1093/nar/gku1003.
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005;102(43):15545–50. https://doi.org/10.1073/pnas.0506580102.
Charoentong P, Finotello F, Angelova M, Mayer C, Efremova M, Rieder D, et al. Pan-cancer immunogenomic analyses reveal genotype-immunophenotype relationships and predictors of response to checkpoint blockade. Cell Rep. 2017;18(1):248–62. https://doi.org/10.1016/j.celrep.2016.12.019.
Yao Q, Wu X, Tao C, Gong W, Chen M, Qu M, et al. Osteoarthritis: pathogenic signaling pathways and therapeutic targets. Signal Transduct Target Ther. 2023;8(1):56. https://doi.org/10.1038/s41392-023-01330-w.
Wang Q, Runhaar J, Kloppenburg M, Boers M, Bijlsma JWJ, Bierma-Zeinstra SMA. Diagnosis of early stage knee osteoarthritis based on early clinical course: data from the CHECK cohort. Arthritis Res Ther. 2021;23(1):217. https://doi.org/10.1186/s13075-021-02598-5.
Oka C, Saleh R, Bessho Y, Reza HM. Interplay between HTRA1 and classical signalling pathways in organogenesis and diseases. Saudi J Biol Sci. 2022;29(4):1919–27. https://doi.org/10.1016/j.sjbs.2021.11.056.
Chien J, Campioni M, Shridhar V, Baldi A. HtrA serine proteases as potential therapeutic targets in cancer. Curr Cancer Drug Targets. 2009;9(4):451–68. https://doi.org/10.2174/156800909788486704.
Pan Y, Fu Y, Baird PN, Guymer RH, Das T, Iwata T. Exploring the contribution of ARMS2 and HTRA1 genetic risk factors in age-related macular degeneration. Prog Retin Eye Res. 2022;101159. https://doi.org/10.1016/j.preteyeres.2022.101159.
Dilliott AA, Berberian SA, Sunderland KM, Binns MA, Zimmer J, Ozzoude M, et al. Rare neurovascular genetic and imaging markers across neurodegenerative diseases. Alzheimers Dement. 2023. https://doi.org/10.1002/alz.13316.
Tiaden AN, Klawitter M, Lux V, Mirsaidi A, Bahrenberg G, Glanz S, et al. Detrimental role for human high temperature requirement serine protease A1 (HTRA1) in the pathogenesis of intervertebral disc (IVD) degeneration. J Biol Chem. 2012;287(25):21335–45. https://doi.org/10.1074/jbc.M112.341032.
Lu Z, Lin V, May A, Che B, Xiao X, Shaw DH, et al. HTRA1 synergizes with oxidized phospholipids in promoting inflammation and macrophage infiltration essential for ocular VEGF expression. PLoS ONE. 2019;14(5):e0216808. https://doi.org/10.1371/journal.pone.0216808.
Pan S, Liu M, Xu H, Chuan J, Yang Z. Lipopolysaccharide activating NF-kB signaling by regulates HTRA1 expression in human retinal pigment epithelial cells. Molecules. 2023;28(5). https://doi.org/10.3390/molecules28052236.
Legendre F, Ollitrault D, Gomez-Leduc T, Bouyoucef M, Hervieu M, Gruchy N, et al. Enhanced chondrogenesis of bone marrow-derived stem cells by using a combinatory cell therapy strategy with BMP-2/TGF-β1, hypoxia, and COL1A1/HtrA1 siRNAs. Sci Rep. 2017;7(1):3406. https://doi.org/10.1038/s41598-017-03579-y.
Tossetta G, Fantone S, Licini C, Marzioni D, Mattioli-Belmonte M. The multifaced role of HtrA1 in the development of joint and skeletal disorders. Bone. 2022;157:116350. https://doi.org/10.1016/j.bone.2022.116350.
Xu L, Golshirazian I, Asbury BJ, Li Y. Induction of high temperature requirement A1, a serine protease, by TGF-beta1 in articular chondrocytes of mouse models of OA. Histol Histopathol. 2014;29(5):609–18. https://doi.org/10.14670/hh-29.10.609.
Okamoto O, Fujiwara S, Abe M, Sato Y. Dermatopontin interacts with transforming growth factor beta and enhances its biological activity. Biochem J. 1999;337(3):537–41. (Pt 3)(Pt.
Jensen MM, Bonna A, Frederiksen SJ, Hamaia SW, Højrup P, Farndale RW, et al. Tyrosine-sulfated dermatopontin shares multiple binding sites and recognition determinants on triple-helical collagens with proteins implicated in cell adhesion and collagen folding, fibrillogenesis, cross-linking, and degradation. Biochim Biophys Acta Proteins Proteom. 2022;1870(5):140771. https://doi.org/10.1016/j.bbapap.2022.140771.
Zhao X, Xie Z, Rao N, Zhang S, Zhang Y. Effect of dermatopontin on osteogenic differentiation of periodontal ligament stem cells. Gene. 2023;858:147185. https://doi.org/10.1016/j.gene.2023.147185.
Ye D, Wang Y, Deng X, Zhou X, Liu D, Zhou B, et al. DNMT3a-dermatopontin axis suppresses breast cancer malignancy via inactivating YAP. Cell Death Dis. 2023;14(2):106. https://doi.org/10.1038/s41419-023-05657-8.
Liu S, Qiu J, He G, Geng C, He W, Liu C, et al. Dermatopontin inhibits WNT signaling pathway via CXXC finger protein 4 in hepatocellular carcinoma. J Cancer. 2020;11(21):6288–98. https://doi.org/10.7150/jca.47157.
Su Y, Du Y, Ye S, Jia G, Ding B, Yu J. Clinical importance and PI3K/Akt pathway-dependent anti-proliferative role of PALMD and DPT in breast cancer. Pathol Res Pract. 2023;249:154717. https://doi.org/10.1016/j.prp.2023.154717.
Unamuno X, Gómez-Ambrosi J, Ramírez B, Rodríguez A, Becerril S, Valentí V, et al. Dermatopontin, a Novel Adipokine promoting adipose tissue extracellular matrix remodelling and inflammation in obesity. J Clin Med. 2020;9(4). https://doi.org/10.3390/jcm9041069.
Tracy LE, Minasian RA, Caterson EJ. Extracellular matrix and dermal fibroblast function in the Healing Wound. Adv Wound Care (New Rochelle). 2016;5(3):119–36. https://doi.org/10.1089/wound.2014.0561.
Catalán V, Domench P, Gómez-Ambrosi J, Ramírez B, Becerril S, Mentxaka A, et al. Dermatopontin influences the development of obesity-Associated Colon cancer by changes in the expression of Extracellular Matrix proteins. Int J Mol Sci. 2022;23(16). https://doi.org/10.3390/ijms23169222.
Lu Y, Wu Q, Liao J, Zhang S, Lu K, Yang S, et al. Identification of the distinctive role of DPT in dilated cardiomyopathy: a study based on bulk and single-cell transcriptomic analysis. Ann Transl Med. 2021;9(18):1401. https://doi.org/10.21037/atm-21-2913.
Lefebvre P, Lalloyer F, Baugé E, Pawlak M, Gheeraert C, Dehondt H, et al. Interspecies NASH disease activity whole-genome profiling identifies a fibrogenic role of PPARα-regulated dermatopontin. JCI Insight. 2017;2(13). https://doi.org/10.1172/jci.insight.92264.
Peng SQ, Zhu XR, Zhao MZ, Zhang YF, Wang AR, Chen MB, et al. Identification of matrix-remodeling associated 5 as a possible molecular oncotarget of pancreatic cancer. Cell Death Dis. 2023;14(2):157. https://doi.org/10.1038/s41419-023-05684-5.
Robins JE, Capehart AA. Matrix remodeling associated 5 expression in trunk and limb during avian development. Int J Dev Biol. 2018;62(4–5):335–40. https://doi.org/10.1387/ijdb.170225ac.
Wen B, Liu M, Qin X, Mao Z, Chen X. Identifying immune cell infiltration and diagnostic biomarkers in heart failure and osteoarthritis by bioinformatics analysis. Med (Baltim). 2023;102(26):e34166. https://doi.org/10.1097/md.0000000000034166.
Bouchareb R, Guauque-Olarte S, Snider J, Zaminski D, Anyanwu A, Stelzer P, et al. Proteomic Architecture of Valvular Extracellular Matrix: FNDC1 and MXRA5 are new biomarkers of aortic stenosis. JACC Basic Transl Sci. 2021;6(1):25–39. https://doi.org/10.1016/j.jacbts.2020.11.008.
Poveda J, Sanz AB, Fernandez-Fernandez B, Carrasco S, Ruiz-Ortega M, Cannata-Ortiz P, et al. MXRA5 is a TGF-β1-regulated human protein with anti-inflammatory and anti-fibrotic properties. J Cell Mol Med. 2017;21(1):154–64. https://doi.org/10.1111/jcmm.12953.
Alsner J, Rødningen OK, Overgaard J. Differential gene expression before and after ionizing radiation of subcutaneous fibroblasts identifies breast cancer patients resistant to radiation-induced fibrosis. Radiother Oncol. 2007;83(3):261–6. https://doi.org/10.1016/j.radonc.2007.05.001.
Wang GH, Yao L, Xu HW, Tang WT, Fu JH, Hu XF, et al. Identification of MXRA5 as a novel biomarker in colorectal cancer. Oncol Lett. 2013;5(2):544–8. https://doi.org/10.3892/ol.2012.1038.
Sun JZ, Zhang JH, Li JB, Yuan F, Tong LQ, Wang XY, et al. MXRA5 is a Novel Immune-Related Biomarker that predicts poor prognosis in Glioma. Dis Markers. 2021;2021:6680883. https://doi.org/10.1155/2021/6680883.
Liu L, Pang H, He Q, Pan B, Sun X, Shan J, et al. A novel strategy to identify candidate diagnostic and prognostic biomarkers for gastric cancer. Cancer Cell Int. 2021;21(1):335. https://doi.org/10.1186/s12935-021-02007-6.
Wang J, Zhuo Z, Wang Y, Yang S, Chen J, Wang Y, et al. Identification and validation of a prognostic risk-scoring Model Based on Ferroptosis-Associated Cluster in Acute myeloid leukemia. Front Cell Dev Biol. 2021;9:800267. https://doi.org/10.3389/fcell.2021.800267.
Alahdal M, Zhang H, Huang R, Sun W, Deng Z, Duan L, et al. Potential efficacy of dendritic cell immunomodulation in the treatment of osteoarthritis. Rheumatology (Oxford). 2021;60(2):507–17. https://doi.org/10.1093/rheumatology/keaa745.
Liu Y, Lu T, Liu Z, Ning W, Li S, Chen Y, et al. Six macrophage-associated genes in synovium constitute a novel diagnostic signature for osteoarthritis. Front Immunol. 2022;13:936606. https://doi.org/10.3389/fimmu.2022.936606.
Chaney S, Vergara R, Qiryaqoz Z, Suggs K, Akkouch A. The involvement of neutrophils in the pathophysiology and treatment of Osteoarthritis. Biomedicines. 2022;10(7). https://doi.org/10.3390/biomedicines10071604.
Luo P, Yuan Q, Wan X, Yang M, Xu P. Effects of Immune cells and cytokines on different cells in OA. J Inflamm Res. 2023;16:2329–43. https://doi.org/10.2147/jir.S413578.
Woodell-May JE, Sommerfeld SD. Role of inflammation and the Immune System in the progression of Osteoarthritis. J Orthop Res. 2020;38(2):253–7. https://doi.org/10.1002/jor.24457.
Zhao H, Dang R, Zhu Y, Qu B, Sayyed Y, Wen Y, et al. Hub genes associated with immune cell infiltration in breast cancer, identified through bioinformatic analyses of multiple datasets. Cancer Biol Med. 2022;19(9):1352–74. https://doi.org/10.20892/j.issn.2095-3941.2021.0586.
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We declare that we have no financial or personal relationships with other people or organizations that can inappropriately influence our work. There is no professional or other personal interest of any nature or kind in any product, service, and/or company that could be construed as influencing the position presented in, or the review of, the manuscript.
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Our work was supported by Hebei North University (H2023405057).
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YS, SH and XY were responsible for conception and design. YS, HY, JG and JD provided statistical analysis. YS and HY assisted in statistical analysis. YS, HY, JG and JD were involved in drafting the manuscript, and SH, and XY were involved in reviewing the manuscript. YS, SH and XY verified the underlying data. All authors approved the final manuscript for submission.
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Sun, Y., Yang, H., Guo, J. et al. Identification of HTRA1, DPT and MXRA5 as potential biomarkers associated with osteoarthritis progression and immune infiltration. BMC Musculoskelet Disord 25, 647 (2024). https://doi.org/10.1186/s12891-024-07758-7
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DOI: https://doi.org/10.1186/s12891-024-07758-7