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Table 2 TGFB1 genotype and variant allele frequencies, and pair-wise standardized LD coefficients (Δ')

From: Transforming growth factor beta-1 (TGFB1) and peak bone mass: association between intragenic polymorphisms and quantitative ultrasound of the heel

    

Linkage Disequilibrium Coefficients (Δ')

SNP

Genotype Frequency

Variant Allele Frequency

-800

-509

Codon 10

Codon 25

713- 8DelC

Codon 263

 

GG

564

       

-800

GA

85

0.07

      
 

AA

4

       
 

CC

280

       

-509

CT

310

0.33

-0.53***

     
 

TT

63

       

Codon 10

TT

212

       
 

TC

337

0.41

-0.47***

0.88***

    
 

CC

97

       

Codon 25

GG

555

       
 

GC

92

0.08

-0.66**

-0.44***

0.48***

   
 

CC

5

       

713- 8delC

CC

626

       
 

C -

18

0.04

-0.61

-0.77**

-0.80***

-1.00**

  
 

- -

0

       

Codon 263

CC

369

       
 

CT

242

0.01

-0.25

0.46***

0.50***

-0.32

-1.00**

 
 

TT

41

       

C861-20T

CC

608

       
 

CT

43

0.25

-0.26 *

0.007

-0.10*

-0.37**

0.22*

-0.49**

 

TT

2

       
  1. * P <0.05, ** P < 0.01, *** P <0.001