From: Text-mining applied to autoimmune disease research: the Sjögren’s syndrome knowledge base
Rank | PATHWAY | SSKB Genes | ENRICHMENT | Raw P | Adjust P |
---|---|---|---|---|---|
1 | Allograft rejection | 23 | 76.02 | 3.62E-39 | 6.82E-38 |
2 | Intestinal immune network for IgA production | 27 | 67.82 | 7.26E-44 | 2.05E-42 |
3 | Asthma | 14 | 58.61 | 4.14E-22 | 2.75E-21 |
4 | Type I diabetes mellitus | 20 | 57.09 | 9.13E-31 | 9.38E-30 |
5 | Graft-versus-host disease | 18 | 53.83 | 3.21E-27 | 2.79E-26 |
6 | Autoimmune thyroid disease | 22 | 52.13 | 1.29E-32 | 1.82E-31 |
7 | Primary immunodeficiency | 14 | 50.24 | 6.38E-21 | 3.79E-20 |
8 | Hematopoietic cell lineage | 33 | 47.1 | 1.39E-46 | 5.24E-45 |
9 | Toll-like receptor signaling pathway | 37 | 46.01 | 1.13E-51 | 6.38E-50 |
10 | Apoptosis | 25 | 35.68 | 5.55E-32 | 6.97E-31 |
11 | NOD-like receptor signaling pathway | 17 | 34.44 | 7.61E-22 | 4.78E-21 |
12 | Amyotrophic lateral sclerosis (ALS) | 14 | 33.18 | 5.81E-18 | 2.85E-17 |
13 | Other glycan degradation | 4 | 31.4 | 6.67E-06 | 1.24E-05 |
14 | Cytokine-cytokine receptor interaction | 66 | 31.05 | 5.91E-79 | 6.68E-77 |
15 | T cell receptor signaling pathway | 26 | 30.24 | 4.12E-31 | 4.66E-30 |
16 | RIG-I-like receptor signaling pathway | 17 | 30.07 | 9.98E-21 | 5.64E-20 |
17 | Cell adhesion molecules (CAMs) | 32 | 29.99 | 6.40E-38 | 1.03E-36 |
18 | Bladder cancer | 10 | 29.9 | 1.06E-12 | 3.24E-12 |
19 | Viral myocarditis | 17 | 29.25 | 1.68E-20 | 9.04E-20 |
20 | Cytosolic DNA-sensing pathway | 13 | 29.16 | 5.78E-16 | 2.42E-15 |
21 | Pancreatic cancer | 15 | 26.17 | 1.88E-17 | 8.50E-17 |
22 | Small cell lung cancer | 16 | 23.92 | 7.32E-18 | 3.45E-17 |
23 | Glycosaminoglycan degradation | 4 | 23.92 | 2.13E-05 | 3.65E-05 |
24 | Natural killer cell mediated cytotoxicity | 25 | 22.92 | 1.06E-26 | 8.56E-26 |
25 | ErbB signaling pathway | 13 | 22.16 | 2.51E-13 | 8.86E-13 |
26 | Epithelial cell signaling in Helicobacter pylori infection | 12 | 22.16 | 2.64E-13 | 9.04E-13 |
27 | Complement and coagulation cascades | 12 | 21.84 | 3.17E-13 | 1.05E-12 |
28 | B cell receptor signaling pathway | 13 | 21.77 | 3.38E-14 | 1.23E-13 |
29 | Prion diseases | 6 | 21.53 | 3.27E-07 | 6.84E-07 |
30 | Antigen processing and presentation | 15 | 21.17 | 5.49E-16 | 2.39E-15 |
31 | Colorectal cancer | 14 | 20.93 | 6.14E-15 | 2.48E-14 |
32 | Adipocytokine signaling pathway | 11 | 20.62 | 6.05E-12 | 1.80E-11 |
33 | Chemokine signaling pathway | 30 | 19.83 | 7.80E-30 | 7.35E-29 |
34 | Prostate cancer | 14 | 19.76 | 1.42E-14 | 5.53E-14 |
35 | Glioma | 10 | 19.32 | 1.10E-10 | 2.89E-10 |
36 | Jak-STAT signaling pathway | 23 | 18.64 | 1.67E-22 | 1.18E-21 |
37 | Non-small cell lung cancer | 8 | 18.61 | 1.13E-08 | 2.50E-08 |
38 | Melanoma | 10 | 17.69 | 2.71E-10 | 6.96E-10 |
39 | Pathways in cancer | 46 | 17.51 | 9.85E-43 | 2.23E-41 |
40 | Fc epsilon RI signaling pathway | 11 | 17.49 | 3.90E-11 | 1.05E-10 |
41 | Chronic myeloid leukemia | 10 | 16.75 | 4.74E-10 | 1.19E-09 |
42 | GnRH signaling pathway | 12 | 14.92 | 3.42E-11 | 9.43E-11 |
43 | Leukocyte transendothelial migration | 14 | 14.9 | 7.91E-13 | 2.48E-12 |
44 | VEGF signaling pathway | 9 | 14.87 | 1.04E-08 | 2.35E-08 |
45 | Hypertrophic cardiomyopathy (HCM) | 10 | 14.78 | 1.67E-09 | 4.10E-09 |
46 | p53 signaling pathway | 8 | 14.56 | 8.19E-08 | 1.75E-07 |
47 | Endometrial cancer | 6 | 14.49 | 3.65E-06 | 7.11E-06 |
48 | Systemic lupus erythematosus | 16 | 14.35 | 3.27E-14 | 1.23E-13 |
49 | MAPK signaling pathway | 30 | 14.01 | 3.15E-25 | 2.37E-24 |
50 | Focal adhesion | 22 | 13.75 | 1.21E-18 | 6.21E-18 |
51 | Dilated cardiomyopathy | 10 | 13.65 | 3.66E-09 | 8.44E-09 |
52 | Type II diabetes mellitus | 5 | 13.36 | 3.63E-05 | 6.12E-05 |
53 | Neurotrophin signaling pathway | 13 | 12.96 | 3.17E-11 | 8.96E-11 |
54 | ECM-receptor interaction | 8 | 11.96 | 3.85E-07 | 7.91E-07 |
55 | Alzheimer's disease | 16 | 11.89 | 6.32E-13 | 2.04E-12 |
56 | Lysosome | 11 | 11.81 | 2.86E-09 | 6.73E-09 |
57 | Arginine and proline metabolism | 5 | 11.63 | 7.15E-05 | 0.0001 |
58 | Renal cell carcinoma | 6 | 10.77 | 2.09E-05 | 3.63E-05 |
59 | Long-term depression | 6 | 10.77 | 2.09E-05 | 3.63E-05 |
60 | Long-term potentiation | 6 | 10.77 | 2.09E-05 | 3.63E-05 |
61 | Proteasome | 4 | 10.47 | 0.0006 | 0.0009 |
62 | Progesterone-mediated oocyte maturation | 7 | 10.22 | 6.00E-06 | 1.15E-05 |
63 | TGF-beta signaling pathway | 7 | 10.11 | 6.48E-06 | 1.22E-05 |
64 | Regulation of actin cytoskeleton | 16 | 9.3 | 2.69E-11 | 7.79E-11 |
65 | Calcium signaling pathway | 13 | 9.17 | 2.36E-09 | 5.67E-09 |
66 | Wnt signaling pathway | 11 | 9.15 | 4.17E-08 | 9.06E-08 |
67 | Gap junction | 6 | 8.37 | 8.67E-05 | 0.0001 |
68 | Cell cycle | 8 | 7.85 | 9.32E-06 | 1.70E-05 |
69 | Oocyte meiosis | 7 | 7.71 | 3.80E-05 | 6.31E-05 |
70 | Axon guidance | 7 | 6.82 | 8.33E-05 | 0.0001 |
71 | Endocytosis | 10 | 6.72 | 2.93E-06 | 5.81E-06 |
72 | Metabolic pathways | 26 | 2.96 | 1.12E-06 | 2.26E-06 |