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Table 3 Phenotypes with causal relationships with hip or knee OA

From: Phenome-wide causal associations between osteoarthritis and other complex traits through the latent causal variable analysis

Phenotype

rG

GCP

P_GCP

Diagnoses - main ICD10: L72 Follicular cysts of skin and subcutaneous tissue

0.358

0.924

2.66E-19

Diseases of the musculoskeletal system and connective tissue

0.840

0.615

9.33E-03

Work hours - lumped category: Over 40 h

0.298

-0.613

3.72E-03

Workplace had a lot of cigarette smoke from other people smoking: Often

0.255

-0.616

1.67E-03

Weight

0.392

-0.623

2.28E-05

Job SOC coding: Higher education teaching professionals

-0.264

-0.638

5.35E-03

Hallux valgus (acquired)

0.347

-0.639

2.59E-04

Heel bone mineral density (BMD)

0.226

-0.645

2.26E-07

FI10 : arithmetic sequence recognition

-0.342

-0.663

1.18E-03

Workplace very hot: Often

0.386

-0.670

8.46E-04

Workplace very dusty: Sometimes

0.596

-0.679

1.17E-05

Job SOC coding: Secondary education teaching professionals

-0.319

-0.686

7.05E-04

Diagnoses - main ICD10: M23 Internal derangement of knee

0.729

-0.697

1.10E-03

FI8 : chained arithmetic

-0.242

-0.726

2.49E-04

Glycated haemoglobin (HbA1c)

0.167

-0.761

2.85E-07

Non-cancer illness code, self-reported: back problem

0.325

-0.789

7.17E-08

Meniscus derangement

0.730

-0.791

1.19E-06

Current employment status: Unemployed

0.374

-0.862

5.69E-15

Obesity

0.406

-0.906

2.62E-33

Workplace had a lot of cigarette smoke from other people smoking: Sometimes

0.317

-0.923

1.76E-47

Non-cancer illness code, self-reported: chronic obstructive airways disease/copd

0.394

-0.932

2.03E-09

  1. Phenotypes with FDR < 0.05 and |GCP| > 0.6. The whole list of phenotypes with significant causal associations with hip or knee OA was provided in Additional file S7, where detailed information of those was provided. OA osteoarthritis, rG genetic correlation, GCP genetic causality proportion, SE standard error, P p value