Table 2 Genes the expression levels of which differed between untreated patients and untreated controls (78 genes)
Gene symbol | Gene name | Probe set(s) | FDa | p |
|---|---|---|---|---|
BDNF | brain-derived neurotrophic factor | 244503_at | +1.8 | 0.016 |
ETS2 | v-ets erythroblastosis virus E26 oncogene homolog 2 (avian) | 201328_at | +1.8 | 0.007 |
SVIP | small VCP/p97-interacting protein | 230285_at | +1.7 | 0.002 |
SH3RF2 | SH3 domain containing ring finger 2 | 228892_at | +1.6 | 0.004 |
TM4SF18 | transmembrane 4 L six family member 18 | 230061_at | +1.5 | 0.007 |
TMTC1 | transmembrane and tetratricopeptide repeat containing 1 | 226322_at 226931_at | +1.5 +1.6 | 0.003 <0.001 |
TMEM18 | transmembrane protein 18 | 225489_at | +1.5 | 0.008 |
N4BP2L1 | NEDD4 binding protein 2-like 1 | 213375_s_at | +1.5 | 0.019 |
FMO2 | flavin containing monooxygenase 2 (non-functional) | 228268_at | +1.5 | 0.002 |
RPL37 | ribosomal protein L37 | 224763_at | +1.5 | <0.001 |
CTDSP2 | CTD (carboxy-terminal domain. RNA polymerase II. polypeptide A) small phosphatase 2 | 238999_at | +1.4 | 0.048 |
RASL10B | RAS-like. Family 10. member B | 235488_at | +1.4 | 0.012 |
SMG1P1 | nuclear pore complex interacting protein-like | 231989_s_at | +1.4 | 0.008 |
ZNF331 | zinc finger protein 331 | 219228_at | +1.4 | <0.001 |
FAM184B | family with sequence similarity 184. member B | 235288_at | +1.4 | 0.013 |
LOC100507303 | uncharacterized LOC100507303 | 228049_x_at | +1.4 | 0.019 |
NCKIPSD | NCK interacting protein with SH3 domain | 218697_at | +1.4 | <0.001 |
ECHDC3 | enoyl CoA hydratase domain containing 3 | 219298_at | +1.3 | 0.049 |
RNF114 | ring finger protein 114 | 200867_at 200868_s_at 211678_s_at | +1.3 +1.3 +1.2 | 0.006 0.023 0.018 |
TMPO | thymopoietin | 224944_at | +1.3 | 0.002 |
RERE | arginine-glutamic acid dipeptide (RE) repeats | 200940_s_at | +1.3 | 0.003 |
TUBD1 | tubulin. Delta 1 | 231853_at | +1.3 | 0.003 |
MARK4 | MAP/microtubule affinity-regulating kinase 4 | 55065_at | +1.3 | 0.005 |
ZNF195 | zinc finger protein 195 | 204234_s_at | +1.3 | 0.003 |
PCF11 | PCF11. cleavage and polyadenylation factor subunit. Homolog (S. cerevisiae) | 203378_at | +1.3 | 0.007 |
DFFA | DNA fragmentation factor. 45 kDa. alpha polypeptide | 226116_at | +1.3 | 0.010 |
PSPC1 | paraspeckle component 1 | 218371_s_at | +1.3 | 0.007 |
RBBP6 | retinoblastoma binding protein 6 | 212783_at | +1.3 | 0.004 |
EIF4B | eukaryotic translation initiation factor 4B | 211937_at | +1.3 | 0.017 |
NPM1 | nucleophosmin (nucleolar phosphoprotein B23. numatrin) | 221691_x_at | +1.3 | 0.011 |
RSBN1 | round spermatid basic protein 1 | 213694_at | +1.2 | 0.003 |
PSIP1 | PC4 and SFRS1 interacting protein 1 | 209337_at | +1.2 | 0.010 |
EIF3G | eukaryotic translation initiation factor 3. subunit G | 208887_at | +1.2 | 0.006 |
COL4A3BP | collagen. Type IV. alpha 3 (Goodpasture antigen) binding protein | 219625_s_at 223465_at | +1.2 +1.2 | 0.003 0.029 |
PCID2 | PCI domain containing 2 | 219940_s_at | +1.2 | 0.003 |
PXDC1 | PX domain containing 1 | 212923_s_at | +1.2 | 0.042 |
BCKDHA | branched chain keto acid dehydrogenase E1, alpha polypeptide | 202331_at | +1.2 | 0.024 |
AKR7A2 | aldo-keto reductase family 7, member A2 | 202139_at | +1.2 | 0.010 |
MRPS2 | mitochondrial ribosomal protein S2 | 218001_at | +1.2 | 0.018 |
RORA | RAR-related orphan receptor A | 226682_at | +1.2 | 0.049 |
RPL36AL | ribosomal protein L36a-like | 207585_s_at | +1.2 | 0.011 |
TFRC | transferrin receptor (p90, CD71) | 208691_at | –3.0 | 0.004 |
SFRP4 | secreted frizzled-related protein 4 | 204051_s_at 204052_s_at | −2.9 | 0.001 0.002 |
NOV | nephroblastoma overexpressed | 214321_at | −2.0 | 0.037 |
PAQR9 | progestin and adipoQ receptor family member IX | 1558322_a_at | −2.0 | <0.001 |
C2orf88 | chromosome 2 open reading frame 88 | 228195_at | −1.9 | 0.011 |
FAM69A | family with sequence similarity 69, member A | 213689_x_at | −1.8 | 0.001 |
TP53INP2 | tumor protein p53 inducible nuclear protein 2 | 224836_at | −1.8 −1.9 | <0.001 0.002 |
SH3KBP1 | SH3-domain kinase binding protein 1 | 1554168_a_at 223082_at | −1.8 | 0.002 |
NINJ2 | ninjurin 2 | 219594_at | −1.7 | 0.039 |
MEST | mesoderm specific transcript homolog (mouse) | 202016_at | −1.7 | 0.010 |
ITGB1BP2 | integrin beta 1 binding protein (melusin) 2 | 219829_at | −1.6 | <0.001 |
PLXDC1 | plexin domain containing 1 | 219700_at | −1.5 | 0.006 |
BPGM | 2,3-bisphosphoglycerate mutase | 203502_at | −1.5 | <0.001 |
MTFP1 | mitochondrial fission process 1 | 223172_s_at | −1.5 | 0.004 |
MAP2K3 | mitogen-activated protein kinase kinase 3 | 215499_at | −1.5 | 0.003 |
LRRN4CL | LRRN4 C-terminal like | 1556427_s_at | −1.4 | 0.042 |
FBXO9 | F-box protein 9 | 210638_s_at212987_at | −1.4 −1.4 | <0.001 <0.001 |
HERC1 | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 | 218306_s_at | −1.4 | <0.001 |
JARID2 | jumonji, AT rich interactive domain 2 | 203297_s_at | −1.4 | <0.001 |
TRAK1 | trafficking protein, kinesin binding 1 | 202079_s_at | −1.4 | 0.004 |
ZNF252P | zinc finger protein 252, pseudogene | 228200_at | −1.4 | <0.001 |
PRSS23 | protease, serine, 23 | 202458_at | −1.4 | 0.030 |
OLFML2B | olfactomedin-like 2B | 213125_at | −1.4 | 0.049 |
MSANTD4 | Myb/SANT-like DNA-binding domain containing 4 with coiled-coils | 227418_at | −1.3 | 0.043 |
ZDHHC7 | zinc finger, DHHC-type containing 7 | 218606_at | −1.3 | <0.001 |
RAP2A | RAP2A, member of RAS oncogene family | 225585_at | −1.3 | 0.016 |
LRP12 | low density lipoprotein receptor-related protein 12 | 219631_at | −1.3 | 0.050 |
BMPR1A | bone morphogenetic protein receptor, type IA | 213578_at | −1.3 | 0.001 |
RNF10 | ring finger protein 10 | 207801_s_at | −1.3 | <0.001 |
COL5A1 | collagen, type V, alpha 1 | 203325_s_at | −1.3 | 0.007 |
INSIG1 | insulin induced gene 1 | 201626_at | −1.3 | 0.046 |
SLC35E3 | solute carrier family 35, member E3 | 218988_at | −1.3 | 0.003 |
MEMO1 | dpy-30 homolog (C. elegans) /// mediator of cell motility 1 | 219065_s_at | −1.3 | 0.004 |
MYL4 | myosin, light chain 4, alkali; atrial, embryonic | 210395_x_at | −1.2 | 0.002 |
COX7A2 | cytochrome c oxidase subunit VIIa polypeptide 2 (liver) | 201597_at | −1.2 | 0.019 |
MGAT4B | mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B | 224598_at | −1.2 | 0.003 |
MRC2 | mannose receptor, C type 2 | 209280_at | −1.2 | 0.010 |