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Table 3 qRT-PCR primer

From: Histological and molecular features of the subacromial bursa of rotator cuff tears compared to non-tendon defects: a pilot study

Gene

Accession No.

Primer sequence

18S rRNA

NM_022551

Forward: 5′ CGGAAAATAGCCTTTGCCATC 3′

Reverse: 5′ AGTTCTCCCGCCCTCTTGGT 3′

IL1b

NM_000576

Forward: 5′ TCCAGGAGAATGACCTGAGC 3′

Reverse: 5′ GTGATCGTACAGGTGCATCG 3’

TNFa

NM_000594

Forward: 5’ AGCCCATGTTGTAGCAAACC 3′

Reverse: 5′ GAGGTACAGGCCCTCTGATG 3’

IL6

NM_000600

Forward: 5’ TGAGGAGACTTGCCTGGTGA 3′

Reverse: 5′ TTGGGTCAGGGGTGGTTATT 3’

IL10

NM_000572

Forward: 5’ TGAGAACAGCTGCACCCACT 3′

Reverse: 5′ GGCAACCCAGGTAACCCTTA 3’

TGFb1

NM_000660.4

Forward: 5’ AAGGACCTCGGCTGGAAGTG 3′

Reverse: 5′ AGGGCCAGGACCTTGCTGTA 3’

MIF

NM_002415

Forward: 5’ GGTTCCTCTCCGAGCTCACC 3′

Reverse: 5′ TAGACCCTGTCCGGGCTGAT 3’

PGP9.5

NM_004181

Forward: 5’ CCATACAGGCAGCCCATGAT 3′

Reverse: 5′ AGACCTTGGCAGCGTCCTTC 3’

GAP43

NM_002045

Forward: 5’ CCGGCAAAGCAGGAGAAACT 3′

Reverse: 5′ TGGAGGACGGCGAGTTATCA 3’

COX2 (PTGS2)

NM_000963

Forward: 5’ TAGAGCCCTTCCTCCTGTGC 3′

Reverse: 5′ TGGGGATCAGGGATGAACTT 3’

PENK

NM_001135690.3

Forward: 5’ TCCTGGCTTGCGTAATGGAA 3′

Reverse: 5′ TTTCTCTGAGGGTGCTGGTG 3’

MMP1

NM_002421.3

Forward: 5’ CACGCCAGATTTGCCAAGAG 3′

Reverse: 5′ GTCCCGATGATCTCCCCTGA 3’

MMP9

NM_004994.2

Forward: 5’ GGGACGCAGACATCGTCATC 3′

Reverse: 5′ GGGACCACAACTCGTCATCG 3’

BMP2

NM_001200.3

Forward: 5’ AGGAGGAGGCAAAGAAAAGG 3′

Reverse: 5′ GGAAGCAGCAACGCTAGA AG 3’

  1. Abbreviations: 18S rRNA ribosomal RNA, IL1b interleukin 1β, TNFa tumor necrosis factor α, IL6 interleukin 6, IL10 interleukin 10, TGFb1 transforming growth factor β1, MIF macrophage migration inhibitory factor, PGP9.5 protein gene product 9.5, GAP43 growth associated protein 43, COX2 cyclooxygenase 2, PENK proenkephalin, MMP1 Matrix Metalloproteinase 1, MMP9 Matrix Metalloproteinase 9, BMP2 Bone Morphogenetic Protein 2