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Table 4 The ten mammalian proteins found most frequently in rules for each of the three classes, not including the default control class, from the emPAI dataset

From: Analysis of mass spectrometry data from the secretome of an explant model of articular cartilage exposed to pro-inflammatory and anti-inflammatory stimuli using machine learning

IL-1β Carprofen IL-1β and Carprofen
Triosephosphate isomerase (73.4) Alpha-2-HS-glycoprotein (99.3) interleukin 8 (81.4)
Albumin (40.4) Tumor necrosis factor receptor superfamily member 11B (15.6) Lumican (14.9)
Serum amyloid A protein (23) Pseudouridylate synthase 7 homolog (15.1) Matrix metalloproteinase 3 (3.1)
Matrix metalloproteinase 3 (21.3) Lysozyme C (2) Desmin (2.6)
Vimentin-1 (9.8) Apolipoprotein E (1.8) Clusterin (2)
Vimentin (6) Matrix gla protein (1.8) Syndecan-4 (1.4)
Enolase B (5.9) Fibromodulin (1.4) Ribonuclease 4 (1)
Thrombospondin 1(5.3) Clusterin (1.3) Thrombospondin-3 (0.8)
Enolase A (3.4) Metalloproteinase inhibitor 1 (0.6) Enolase (0.6)
Keratin (3.8) Retinoblastoma-like protein 2 (0.4) Cartilage intermediate layer protein 1 (0.4)
  1. The percentage of rules each protein was used in is shown in brackets.