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Table 2 P -values generated by significance testing of BioHEL for the emPAI, ProteinProphet and combined datasets

From: Analysis of mass spectrometry data from the secretome of an explant model of articular cartilage exposed to pro-inflammatory and anti-inflammatory stimuli using machine learning

Dataset P-value
emPAI 1.64E-100
ProteinProphet 1.23E-220
ProteinProphet and emPAI combined 0
  1. P-values were generated using a one-tailed permutation test. Classifications were run on datasets with randomized sample labels, using leave-one-out cross-validation; this was performed 50 times.